Package: glmmPen
Type: Package
Title: High Dimensional Penalized Generalized Linear Mixed Models
        (pGLMM)
Version: 1.5.4.8
Date: 2024-08-29
Authors@R: c(
    person("Hillary", "Heiling", email = "hmheiling@gmail.com", role = c("aut", "cre")),
    person("Naim", "Rashid", email = "nur2@email.unc.edu", role = c("aut")),
    person("Quefeng", "Li", email = "quefeng@email.unc.edu", role = c("aut")),
    person("Joseph", "Ibrahim", email = "ibrahim@bios.unc.edu", role = c("aut")))
Description: Fits high dimensional penalized generalized linear mixed
        models using the Monte Carlo Expectation Conditional
        Minimization (MCECM) algorithm. The purpose of the package is
        to perform variable selection on both the fixed and random
        effects simultaneously for generalized linear mixed models. The
        package supports fitting of Binomial, Gaussian, and Poisson
        data with canonical links, and supports penalization using the
        MCP, SCAD, or LASSO penalties. The MCECM algorithm is described
        in Rashid et al. (2020) <doi:10.1080/01621459.2019.1671197>.
        The techniques used in the minimization portion of the
        procedure (the M-step) are derived from the procedures of the
        'ncvreg' package (Breheny and Huang (2011)
        <doi:10.1214/10-AOAS388>) and 'grpreg' package (Breheny and
        Huang (2015) <doi:10.1007/s11222-013-9424-2>), with appropriate
        modifications to account for the estimation and penalization of
        the random effects. The 'ncvreg' and 'grpreg' packages also
        describe the MCP, SCAD, and LASSO penalties.
License: GPL (>= 2)
Encoding: UTF-8
Imports: ggplot2, Matrix, methods, ncvreg, reshape2, rstan (>= 2.18.1),
        stringr, mvtnorm, MASS, survival, rstantools, RcppParallel (>=
        5.0.1)
Depends: lme4, bigmemory, Rcpp (>= 0.12.0), R (>= 3.6.0)
LinkingTo: BH (>= 1.66.0), bigmemory, Rcpp (>= 0.12.0), RcppArmadillo,
        RcppEigen (>= 0.3.3.3.0), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0), RcppParallel (>= 5.0.1)
RoxygenNote: 7.1.2
NeedsCompilation: yes
Packaged: 2026-10-08 10:39:57 UTC; root
Author: Hillary Heiling [aut, cre], Naim Rashid [aut], Quefeng Li
        [aut], Joseph Ibrahim [aut]
Suggests: testthat, knitr, rmarkdown
Biarch: true
SystemRequirements: GNU make
Config/pak/sysreqs: cmake make libicu-dev
Repository: https://hheiling.r-universe.dev
Date/Publication: 2024-08-30 12:27:17 UTC
RemoteUrl: https://github.com/hheiling/glmmpen
RemoteRef: HEAD
RemoteSha: c7911363cc26d62d81277be2ffa7e38367941c79
Maintainer: Hillary Heiling <hmheiling@gmail.com>